STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF49760.1Uncharacterized protein. (205 aa)    
Predicted Functional Partners:
trmB
tRNA (guanine-N7-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
  
 0.811
SDF49804.1
5-methylthioadenosine/S-adenosylhomocysteine deaminase.
       0.782
SDF57011.1
Arabinofuranosyltransferase.
  
     0.681
SDF57056.1
Arabinosyltransferase C.
  
     0.624
SDF56963.1
Arabinosyltransferase A/arabinosyltransferase B/arabinosyltransferase C.
  
     0.623
SDF49726.1
acyl-CoA thioesterase.
       0.565
SDF84112.1
Hypothetical protein.
  
     0.555
SDF51448.1
Hypothetical protein.
  
 
 
 0.528
SDE99470.1
Protein of unknown function.
  
     0.521
SDF95734.1
Hypothetical protein.
  
     0.500
Your Current Organism:
Pseudonocardia oroxyli
NCBI taxonomy Id: 366584
Other names: CGMCC 4.3143, DSM 44984, JCM 13909, P. oroxyli, Pseudonocardia oroxyli Gu et al. 2006, Pseudonocardia sp. D10, strain D10
Server load: low (16%) [HD]