Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDF90274.1 | SDF90300.1 | SAMN05216377_107250 | SAMN05216377_107251 | RNA polymerase, sigma-24 subunit, RpoE; Belongs to the sigma-70 factor family. ECF subfamily. | Hypothetical protein. | 0.781 |
SDF90274.1 | SDF90334.1 | SAMN05216377_107250 | SAMN05216377_107252 | RNA polymerase, sigma-24 subunit, RpoE; Belongs to the sigma-70 factor family. ECF subfamily. | Hypothetical protein. | 0.741 |
SDF90274.1 | SDF90355.1 | SAMN05216377_107250 | SAMN05216377_107253 | RNA polymerase, sigma-24 subunit, RpoE; Belongs to the sigma-70 factor family. ECF subfamily. | CsbD-like; Belongs to the UPF0337 (CsbD) family. | 0.527 |
SDF90300.1 | SDF90274.1 | SAMN05216377_107251 | SAMN05216377_107250 | Hypothetical protein. | RNA polymerase, sigma-24 subunit, RpoE; Belongs to the sigma-70 factor family. ECF subfamily. | 0.781 |
SDF90300.1 | SDF90334.1 | SAMN05216377_107251 | SAMN05216377_107252 | Hypothetical protein. | Hypothetical protein. | 0.741 |
SDF90300.1 | SDF90355.1 | SAMN05216377_107251 | SAMN05216377_107253 | Hypothetical protein. | CsbD-like; Belongs to the UPF0337 (CsbD) family. | 0.537 |
SDF90334.1 | SDF90274.1 | SAMN05216377_107252 | SAMN05216377_107250 | Hypothetical protein. | RNA polymerase, sigma-24 subunit, RpoE; Belongs to the sigma-70 factor family. ECF subfamily. | 0.741 |
SDF90334.1 | SDF90300.1 | SAMN05216377_107252 | SAMN05216377_107251 | Hypothetical protein. | Hypothetical protein. | 0.741 |
SDF90334.1 | SDF90355.1 | SAMN05216377_107252 | SAMN05216377_107253 | Hypothetical protein. | CsbD-like; Belongs to the UPF0337 (CsbD) family. | 0.548 |
SDF90355.1 | SDF90274.1 | SAMN05216377_107253 | SAMN05216377_107250 | CsbD-like; Belongs to the UPF0337 (CsbD) family. | RNA polymerase, sigma-24 subunit, RpoE; Belongs to the sigma-70 factor family. ECF subfamily. | 0.527 |
SDF90355.1 | SDF90300.1 | SAMN05216377_107253 | SAMN05216377_107251 | CsbD-like; Belongs to the UPF0337 (CsbD) family. | Hypothetical protein. | 0.537 |
SDF90355.1 | SDF90334.1 | SAMN05216377_107253 | SAMN05216377_107252 | CsbD-like; Belongs to the UPF0337 (CsbD) family. | Hypothetical protein. | 0.548 |