STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF96375.1Regulatory protein, luxR family. (262 aa)    
Predicted Functional Partners:
SDE57515.1
Signal transduction histidine kinase.
  
 0.971
SDE51525.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
 0.809
SDG09553.1
Anti-anti-sigma factor.
  
 0.809
SDE86452.1
Signal transduction histidine kinase.
   
 0.798
SDG56936.1
Signal transduction histidine kinase.
  
  0.619
SDF22978.1
GAF domain-containing protein.
 
 0.582
SDF46875.1
Two-component system, NarL family, sensor histidine kinase DesK.
  
  0.582
SDG40453.1
Signal transduction histidine kinase.
  
  0.582
SDF89729.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  0.580
SDE52481.1
Signal transduction histidine kinase.
  
  0.579
Your Current Organism:
Pseudonocardia oroxyli
NCBI taxonomy Id: 366584
Other names: CGMCC 4.3143, DSM 44984, JCM 13909, P. oroxyli, Pseudonocardia oroxyli Gu et al. 2006, Pseudonocardia sp. D10, strain D10
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