STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG12024.1Hypothetical protein. (307 aa)    
Predicted Functional Partners:
SDH31386.1
Hypothetical protein.
   
 
 0.974
SDG12063.1
Hypothetical protein.
 
   
 0.956
SDG11891.1
Helix-turn-helix.
  
   0.726
SDG11959.1
Protein of unknown function.
       0.658
SDG11991.1
Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC.
       0.658
SDH71438.1
Helix-turn-helix.
 
   0.621
SDF07043.1
Helix-turn-helix.
 
   0.592
SDE80058.1
Transcriptional regulator, XRE family with cupin sensor.
  
 
 0.570
SDF12709.1
Transcriptional regulator, XRE family with cupin sensor.
  
 
 0.570
SDE52044.1
Transcriptional regulator, XRE family with cupin sensor.
  
 
 0.554
Your Current Organism:
Pseudonocardia oroxyli
NCBI taxonomy Id: 366584
Other names: CGMCC 4.3143, DSM 44984, JCM 13909, P. oroxyli, Pseudonocardia oroxyli Gu et al. 2006, Pseudonocardia sp. D10, strain D10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.