STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG53288.1Nicotinamidase-related amidase. (210 aa)    
Predicted Functional Partners:
SDG53319.1
N-formylmaleamate deformylase.
 
  0.973
maiA-2
Maleate isomerase; Catalyzes cis-trans isomerization of the C2-C3 double bond in maleate to yield fumarate.
 
  
  0.928
SDH49104.1
N-formylmaleamate deformylase.
 
  0.894
maiA
Maleate isomerase; Catalyzes cis-trans isomerization of the C2-C3 double bond in maleate to yield fumarate.
 
  
  0.862
SDG53106.1
Salicylate hydroxylase.
 
     0.812
SDG53146.1
MFS transporter, putative metabolite:H+ symporter.
 
     0.809
SDG53176.1
Carbon-monoxide dehydrogenase medium subunit.
    
  0.799
SDG53254.1
Carbon-monoxide dehydrogenase small subunit.
    
  0.799
SDG53209.1
Carbon-monoxide dehydrogenase large subunit.
    
  0.798
maiA-3
Maleate isomerase; Catalyzes cis-trans isomerization of the C2-C3 double bond in maleate to yield fumarate.
 
  
  0.775
Your Current Organism:
Pseudonocardia oroxyli
NCBI taxonomy Id: 366584
Other names: CGMCC 4.3143, DSM 44984, JCM 13909, P. oroxyli, Pseudonocardia oroxyli Gu et al. 2006, Pseudonocardia sp. D10, strain D10
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.