STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG48441.1HTH gntR-type domain-containing protein; GntR family transcriptional regulator, phosphonate transport system regulatory protein/GntR family transcriptional regulator, arabinose operon transcriptional repressor/GntR family transcriptional regulator, transcriptional regulator of bglA/GntR family transcriptional regulator. (81 aa)    
Predicted Functional Partners:
SDG63437.1
DNA-binding transcriptional regulator, GntR family.
  
     0.627
SDG48484.1
Hypothetical protein.
       0.551
SDG48523.1
Hypothetical protein.
       0.537
SDG45816.1
Transcriptional regulator, GntR family.
  
     0.515
SDG40342.1
DNA-binding transcriptional regulator, GntR family.
  
     0.506
SDE56657.1
DNA-binding transcriptional regulator, GntR family.
  
     0.406
SDG48569.1
Hypothetical protein.
       0.403
Your Current Organism:
Pseudonocardia oroxyli
NCBI taxonomy Id: 366584
Other names: CGMCC 4.3143, DSM 44984, JCM 13909, P. oroxyli, Pseudonocardia oroxyli Gu et al. 2006, Pseudonocardia sp. D10, strain D10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.