STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG80288.1Transcriptional regulator, TetR family. (205 aa)    
Predicted Functional Partners:
SDG80254.1
2-deoxy-D-gluconate 3-dehydrogenase.
       0.773
selD
Selenophosphate synthase; Synthesizes selenophosphate from selenide and ATP.
       0.678
SDE53474.1
Transcriptional regulator, TetR family.
  
     0.637
SDG62881.1
Transcriptional regulator, TetR family.
  
     0.615
SDF86106.1
Transcriptional regulator, TetR family.
  
     0.614
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
       0.502
SDG80402.1
Selenocysteine-specific elongation factor.
       0.502
SDE68144.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD.
  
     0.411
Your Current Organism:
Pseudonocardia oroxyli
NCBI taxonomy Id: 366584
Other names: CGMCC 4.3143, DSM 44984, JCM 13909, P. oroxyli, Pseudonocardia oroxyli Gu et al. 2006, Pseudonocardia sp. D10, strain D10
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