Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDH12342.1 | SDH12376.1 | SAMN05216377_11950 | SAMN05216377_11951 | Protein of unknown function. | Hypothetical protein. | 0.963 |
SDH12376.1 | SDH12342.1 | SAMN05216377_11951 | SAMN05216377_11950 | Hypothetical protein. | Protein of unknown function. | 0.963 |
SDH12376.1 | rpsB | SAMN05216377_11951 | SAMN05216377_104330 | Hypothetical protein. | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.966 |
SDH12376.1 | rpsC | SAMN05216377_11951 | SAMN05216377_102353 | Hypothetical protein. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.984 |
SDH12376.1 | rpsD | SAMN05216377_11951 | SAMN05216377_102375 | Hypothetical protein. | Small subunit ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.968 |
SDH12376.1 | rpsE | SAMN05216377_11951 | SAMN05216377_102364 | Hypothetical protein. | Small subunit ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.979 |
SDH12376.1 | rpsG | SAMN05216377_11951 | SAMN05216377_102343 | Hypothetical protein. | Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.954 |
SDH12376.1 | rpsJ | SAMN05216377_11951 | SAMN05216377_102346 | Hypothetical protein. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.968 |
SDH12376.1 | rpsK | SAMN05216377_11951 | SAMN05216377_102374 | Hypothetical protein. | SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.980 |
SDH12376.1 | rpsO | SAMN05216377_11951 | SAMN05216377_104252 | Hypothetical protein. | Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.967 |
SDH12376.1 | rpsS | SAMN05216377_11951 | SAMN05216377_102351 | Hypothetical protein. | SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.978 |
rpsB | SDH12376.1 | SAMN05216377_104330 | SAMN05216377_11951 | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Hypothetical protein. | 0.966 |
rpsB | rpsC | SAMN05216377_104330 | SAMN05216377_102353 | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
rpsB | rpsD | SAMN05216377_104330 | SAMN05216377_102375 | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Small subunit ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
rpsB | rpsE | SAMN05216377_104330 | SAMN05216377_102364 | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Small subunit ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
rpsB | rpsG | SAMN05216377_104330 | SAMN05216377_102343 | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
rpsB | rpsJ | SAMN05216377_104330 | SAMN05216377_102346 | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
rpsB | rpsK | SAMN05216377_104330 | SAMN05216377_102374 | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
rpsB | rpsO | SAMN05216377_104330 | SAMN05216377_104252 | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.999 |
rpsB | rpsS | SAMN05216377_104330 | SAMN05216377_102351 | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.999 |
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