STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH14150.1Threonine/homoserine efflux transporter RhtA. (312 aa)    
Predicted Functional Partners:
SDF98682.1
Putative stress-induced transcription regulator.
 
     0.718
SDH14196.1
Uncharacterized conserved protein GlcG, DUF336 family.
       0.686
SDH14232.1
Hydrophobic/amphiphilic exporter-1, HAE1 family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.671
SDE50362.1
CGNR zinc finger domain-containing protein.
 
     0.645
SDF14664.1
O-acetylserine/cysteine efflux transporter.
  
     0.532
SDH14262.1
Deazaflavin-dependent oxidoreductase, nitroreductase family.
       0.517
SDF87418.1
Uncharacterized membrane protein YczE.
  
     0.512
SDH14298.1
Peptidase M50B-like.
       0.498
SDH14339.1
Probable F420-dependent oxidoreductase, Rv2161c family.
       0.486
Your Current Organism:
Pseudonocardia oroxyli
NCBI taxonomy Id: 366584
Other names: CGMCC 4.3143, DSM 44984, JCM 13909, P. oroxyli, Pseudonocardia oroxyli Gu et al. 2006, Pseudonocardia sp. D10, strain D10
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