node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDF52331.1 | SDG01822.1 | SAMN05216377_105165 | SAMN05216377_108179 | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | ATP-dependent DNA helicase, Rep family. | 0.998 |
SDF52331.1 | SDH19404.1 | SAMN05216377_105165 | SAMN05216377_12021 | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | Conjugative relaxase domain-containing protein, TrwC/TraI family. | 0.735 |
SDF52331.1 | recD | SAMN05216377_105165 | SAMN05216377_11741 | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | DNA helicase/exodeoxyribonuclease V, alpha subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recomb [...] | 0.735 |
SDG01822.1 | SDF52331.1 | SAMN05216377_108179 | SAMN05216377_105165 | ATP-dependent DNA helicase, Rep family. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.998 |
SDG01822.1 | SDH19404.1 | SAMN05216377_108179 | SAMN05216377_12021 | ATP-dependent DNA helicase, Rep family. | Conjugative relaxase domain-containing protein, TrwC/TraI family. | 0.871 |
SDG01822.1 | recB | SAMN05216377_108179 | SAMN05216377_11742 | ATP-dependent DNA helicase, Rep family. | Exodeoxyribonuclease V beta subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and rep [...] | 0.821 |
SDG01822.1 | recC | SAMN05216377_108179 | SAMN05216377_11743 | ATP-dependent DNA helicase, Rep family. | DNA helicase/exodeoxyribonuclease V, gamma subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recomb [...] | 0.446 |
SDG01822.1 | recD | SAMN05216377_108179 | SAMN05216377_11741 | ATP-dependent DNA helicase, Rep family. | DNA helicase/exodeoxyribonuclease V, alpha subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recomb [...] | 0.878 |
SDG28285.1 | SDH18854.1 | SAMN05216377_110145 | SAMN05216377_1208 | TraM recognition site of TraD and TraG. | Transcriptional regulator, XRE family. | 0.436 |
SDG28285.1 | SDH19404.1 | SAMN05216377_110145 | SAMN05216377_12021 | TraM recognition site of TraD and TraG. | Conjugative relaxase domain-containing protein, TrwC/TraI family. | 0.770 |
SDH02831.1 | SDH18854.1 | SAMN05216377_11810 | SAMN05216377_1208 | Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase. | Transcriptional regulator, XRE family. | 0.441 |
SDH02831.1 | SDH19404.1 | SAMN05216377_11810 | SAMN05216377_12021 | Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase. | Conjugative relaxase domain-containing protein, TrwC/TraI family. | 0.772 |
SDH18854.1 | SDG28285.1 | SAMN05216377_1208 | SAMN05216377_110145 | Transcriptional regulator, XRE family. | TraM recognition site of TraD and TraG. | 0.436 |
SDH18854.1 | SDH02831.1 | SAMN05216377_1208 | SAMN05216377_11810 | Transcriptional regulator, XRE family. | Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase. | 0.441 |
SDH18854.1 | SDH19230.1 | SAMN05216377_1208 | SAMN05216377_12017 | Transcriptional regulator, XRE family. | TraM recognition site of TraD and TraG. | 0.455 |
SDH18854.1 | SDH19404.1 | SAMN05216377_1208 | SAMN05216377_12021 | Transcriptional regulator, XRE family. | Conjugative relaxase domain-containing protein, TrwC/TraI family. | 0.660 |
SDH19230.1 | SDH18854.1 | SAMN05216377_12017 | SAMN05216377_1208 | TraM recognition site of TraD and TraG. | Transcriptional regulator, XRE family. | 0.455 |
SDH19230.1 | SDH19404.1 | SAMN05216377_12017 | SAMN05216377_12021 | TraM recognition site of TraD and TraG. | Conjugative relaxase domain-containing protein, TrwC/TraI family. | 0.895 |
SDH19230.1 | whiB-9 | SAMN05216377_12017 | SAMN05216377_12015 | TraM recognition site of TraD and TraG. | Homeodomain-like domain-containing protein; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.808 |
SDH19404.1 | SDF52331.1 | SAMN05216377_12021 | SAMN05216377_105165 | Conjugative relaxase domain-containing protein, TrwC/TraI family. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.735 |