STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH35202.1Uncharacterized membrane protein HdeD, DUF308 family. (202 aa)    
Predicted Functional Partners:
SDF36500.1
Putative Mg2+ transporter-C (MgtC) family protein.
 
  
 0.819
SDH35251.1
Predicted PurR-regulated permease PerM.
       0.781
SDH35163.1
NTE family protein.
       0.697
SDE51525.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
    0.478
SDG09553.1
Anti-anti-sigma factor.
  
    0.478
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
       0.473
SDF11492.1
Uncharacterized membrane protein.
      
 0.408
Your Current Organism:
Pseudonocardia oroxyli
NCBI taxonomy Id: 366584
Other names: CGMCC 4.3143, DSM 44984, JCM 13909, P. oroxyli, Pseudonocardia oroxyli Gu et al. 2006, Pseudonocardia sp. D10, strain D10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.