STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH47108.12,3-dihydroxyphenylpropionate 1,2-dioxygenase. (318 aa)    
Predicted Functional Partners:
SDH47192.1
2-hydroxymuconate-semialdehyde hydrolase.
 
  
  0.929
SDH47234.1
2-keto-4-pentenoate hydratase.
 
  
 0.878
SDH47275.1
4-oxalocrotonate decarboxylase.
 
  
 0.872
SDG39245.1
3-(3-hydroxy-phenyl)propionate hydroxylase.
 
  
  0.869
SDH64946.1
3-phenylpropionate/cinnamic acid dioxygenase, small subunit.
 
   
 0.785
SDE57959.1
Hypothetical protein.
    
 0.784
SDG60969.1
Protocatechuate 3,4-dioxygenase beta subunit.
     
 0.774
SDG61004.1
Protocatechuate 3,4-dioxygenase alpha subunit.
     
 0.774
SDH47068.1
Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase).
       0.773
SDH47149.1
Carboxymethylenebutenolidase.
       0.773
Your Current Organism:
Pseudonocardia oroxyli
NCBI taxonomy Id: 366584
Other names: CGMCC 4.3143, DSM 44984, JCM 13909, P. oroxyli, Pseudonocardia oroxyli Gu et al. 2006, Pseudonocardia sp. D10, strain D10
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