Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Caul_0002 | Caul_0003 | Caul_0002 | Caul_0003 | PFAM: 2OG-Fe(II) oxygenase; KEGG: ccr:CC_0009 DNA alkylation damage repair protein AlkB. | PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: xom:XOO_0841 aminopeptidase N. | 0.547 |
Caul_0002 | dnaK | Caul_0002 | Caul_0004 | PFAM: 2OG-Fe(II) oxygenase; KEGG: ccr:CC_0009 DNA alkylation damage repair protein AlkB. | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.420 |
Caul_0003 | Caul_0002 | Caul_0003 | Caul_0002 | PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: xom:XOO_0841 aminopeptidase N. | PFAM: 2OG-Fe(II) oxygenase; KEGG: ccr:CC_0009 DNA alkylation damage repair protein AlkB. | 0.547 |
Caul_0003 | dnaK | Caul_0003 | Caul_0004 | PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: xom:XOO_0841 aminopeptidase N. | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.505 |
Caul_0003 | fusA | Caul_0003 | Caul_0803 | PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: xom:XOO_0841 aminopeptidase N. | Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...] | 0.482 |
dnaK | Caul_0002 | Caul_0004 | Caul_0002 | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | PFAM: 2OG-Fe(II) oxygenase; KEGG: ccr:CC_0009 DNA alkylation damage repair protein AlkB. | 0.420 |
dnaK | Caul_0003 | Caul_0004 | Caul_0003 | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: xom:XOO_0841 aminopeptidase N. | 0.505 |
dnaK | fusA | Caul_0004 | Caul_0803 | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...] | 0.752 |
fusA | Caul_0003 | Caul_0803 | Caul_0003 | Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...] | PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: xom:XOO_0841 aminopeptidase N. | 0.482 |
fusA | dnaK | Caul_0803 | Caul_0004 | Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...] | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.752 |