Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Caul_0100PFAM: conserved hypothetical protein; KEGG: ccr:CC_3590 hypothetical protein. (156 aa)    
Predicted Functional Partners:
cmk
KEGG: ccr:CC_3588 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region.
  
    0.644
aroA
3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
       0.631
Caul_5028
TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: ccr:CC_3751 putative DNA polymerase III, delta subunit.
  
     0.604
Caul_4059
KEGG: ccr:CC_0699 hypothetical protein.
  
     0.578
Caul_2496
PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: ccr:CC_1652 hypothetical protein.
  
    0.552
Caul_3145
TIGRFAM: phasin family protein; PFAM: Phasin family protein; KEGG: ccr:CC_2160 hypothetical protein.
  
     0.549
tatA
Twin-arginine translocation protein, TatA/E family subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
  
     0.547
Caul_0714
PFAM: heat shock protein DnaJ domain protein; KEGG: ccr:CC_3010 DnaJ-related protein.
  
     0.527
Caul_4781
PFAM: Heparinase II/III family protein; KEGG: ccr:CC_0100 hypothetical protein.
  
     0.522
Caul_4726
PFAM: protein of unknown function DUF610 YibQ; KEGG: ccr:CC_3439 hypothetical protein.
  
     0.509
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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