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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_0200PFAM: nitroreductase; KEGG: ccr:CC_0324 NADH dehydrogenase. (225 aa)    
Predicted Functional Partners:
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
  
    0.566
Caul_0202
PFAM: GCN5-related N-acetyltransferase; KEGG: ccr:CC_0326 hypothetical protein.
       0.539
Caul_1950
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: sat:SYN_02065 export ABC transporter ATP-binding protein / export ABC transporter permease protein.
  
  
 0.470
Caul_4950
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: ccr:CC_3607 glutamate synthase, large subunit.
     
 0.463
Caul_1229
PFAM: ABC-2 type transporter; KEGG: ccr:CC_2244 ABC-2 type transporter.
  
  
 0.403
Caul_1709
PFAM: ABC-2 type transporter; KEGG: xau:Xaut_4131 ABC-2 type transporter.
  
  
 0.403
Caul_1951
PFAM: ABC-2 type transporter; KEGG: azo:azo2909 ABC transporter permease.
  
  
 0.403
Caul_4411
PFAM: ABC-2 type transporter; KEGG: ccr:CC_3372 ABC-2 type transporter, putative.
  
  
 0.403
tadA
CMP/dCMP deaminase zinc-binding; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
  
    0.403
Caul_4663
PFAM: ABC-2 type transporter; KEGG: pde:Pden_5055 ABC-2 type transporter.
  
  
 0.403
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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