STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_0323Hypothetical protein; KEGG: son:SO_1460 type I restriction-modification system, S subunit, putative. (493 aa)    
Predicted Functional Partners:
Caul_0324
PFAM: N-6 DNA methylase; KEGG: son:SO_1457 type I restriction-modification system, M subunit, putative.
 
     0.946
Caul_4033
NmrA family protein; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; TrkA-N domain protein; NmrA family protein; KEGG: bch:Bcen2424_6668 NmrA family protein.
  
     0.559
Caul_0325
KEGG: sal:Sala_3190 hypothetical protein.
       0.404
Caul_0326
TIGRFAM: Ti-type conjugative transfer relaxase TraA; PFAM: MobA/MobL protein; KEGG: bbt:BBta_0435 putative conjugal transfer protein.
       0.404
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.