STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_0343PFAM: beta-lactamase domain protein; KEGG: ccr:CC_0451 metallo-beta-lactamase family protein. (280 aa)    
Predicted Functional Partners:
Caul_0342
PFAM: thioesterase superfamily protein; KEGG: rxy:Rxyl_0908 phenylacetic acid degradation-related protein.
  
    0.544
Caul_0344
KEGG: ccr:CC_0452 hypothetical protein.
       0.529
Caul_1318
PFAM: protein of unknown function DUF442; KEGG: ccr:CC_0924 hypothetical protein.
 
     0.525
Caul_2364
TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: rpb:RPB_1143 sarcosine oxidase, alpha subunit family; Belongs to the GcvT family.
  
 0.421
Caul_0345
Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
  
    0.404
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.