STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_0561PFAM: cytochrome c class I; KEGG: nar:Saro_1689 cytochrome c, class I. (157 aa)    
Predicted Functional Partners:
Caul_0557
PFAM: methylamine dehydrogenase heavy subunit; KEGG: nar:Saro_1685 amine dehydrogenase.
 
 
 0.969
Caul_0562
KEGG: nar:Saro_1690 cytochrome c, class I.
 
  
 0.948
Caul_0559
PFAM: Redoxin domain protein; KEGG: nar:Saro_1687 hypothetical protein.
 
 
 
 0.939
Caul_0560
Amine dehydrogenase; Methylamine dehydrogenase carries out the oxidation of methylamine. Electrons are passed from methylamine dehydrogenase to amicyanin; Belongs to the aromatic amine dehydrogenase light chain family.
 
     0.933
Caul_0701
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.790
Caul_2438
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: ccr:CC_1402 cb-type cytochrome c oxidase subunit II.
 
 
 0.790
Caul_0558
KEGG: nar:Saro_1686 hypothetical protein.
       0.779
Caul_0702
Cytochrome b/b6 domain; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.775
Caul_4501
PFAM: cytochrome c oxidase subunit III; KEGG: ccr:CC_3402 cytochrome c oxidase, subunit III.
  
 
 0.772
Caul_2437
KEGG: ccr:CC_1401 cb-type cytochrome c oxidase subunit I; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
 
 
 0.769
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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