STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_0809Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: cmi:CMM_2891 putative transcription regulator, MarR family. (153 aa)    
Predicted Functional Partners:
Caul_0806
PFAM: acriflavin resistance protein; KEGG: ccr:CC_3197 AcrB/AcrD/AcrF family protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.625
Caul_0807
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ccr:CC_3196 HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.624
Caul_0808
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: ccr:CC_3195 efflux system protein.
       0.624
Caul_1376
PFAM: binding-protein-dependent transport systems inner membrane component; Substrate-binding region of ABC-type glycine betaine transport system; KEGG: rpd:RPD_2104 substrate-binding region of ABC-type glycine betaine transport system.
  
  
 0.495
Caul_0448
KEGG: mva:Mvan_3987 hypothetical protein.
  
     0.423
Caul_3554
PFAM: major facilitator superfamily MFS_1; KEGG: ccr:CC_2315 hypothetical protein.
 
     0.415
Caul_2941
PFAM: fatty acid desaturase; KEGG: rca:Rcas_1533 fatty acid desaturase.
  
     0.400
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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