STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_0901TIGRFAM: rpsU-divergently transcribed protein; PFAM: COQ9 domain protein; KEGG: ccr:CC_3296 hypothetical protein. (218 aa)    
Predicted Functional Partners:
coq7
Ubiquinone biosynthesis protein COQ7; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.
  
 
 0.926
Caul_5031
KEGG: ccr:CC_3748 hypothetical protein.
  
     0.697
Caul_4186
KEGG: ccr:CC_0189 hypothetical protein.
  
     0.685
Caul_1199
PFAM: alpha/beta hydrolase fold; KEGG: ccr:CC_1053 hypothetical protein.
  
 
   0.683
Caul_1464
KEGG: rme:Rmet_1010 putative uncharacterized protein involved in ubiquinone biosynthesis.
  
 
 
 0.663
Caul_4059
KEGG: ccr:CC_0699 hypothetical protein.
  
     0.662
Caul_3148
PFAM: ATPase MipZ; KEGG: ccr:CC_2165 hypothetical protein.
  
     0.624
Caul_4350
PFAM: regulatory protein MarR; KEGG: ccr:CC_2930 transcriptional regulator, MarR family.
 
     0.600
rpsU
PFAM: ribosomal protein S21; KEGG: ccr:CC_3297 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
       0.569
rplB
Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
   
 0.563
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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