Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Caul_0983PFAM: ribonuclease BN; KEGG: rsp:RSP_2660 ribonuclease BN family protein. (414 aa)    
Predicted Functional Partners:
Caul_0382
PFAM: phospholipase D/Transphosphatidylase; KEGG: ccr:CC_0522 phospholipase D family protein.
 
  
 0.598
Caul_1241
Signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; HWE histidine kinase; PAS fold-3 domain protein; PAS fold-4 domain protein; KEGG: ccr:CC_3058 response regulator/sensor histidine kinase.
 
   
 0.576
Caul_0982
PFAM: GCN5-related N-acetyltransferase; KEGG: ccr:CC_0871 hypothetical protein.
       0.565
Caul_0984
PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein; KEGG: ccr:CC_0872 hypothetical protein.
       0.547
Caul_4110
PFAM: response regulator receiver; KEGG: ccr:CC_0630 response regulator.
  
     0.538
Caul_0079
KEGG: ccr:CC_3560 response regulator/sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; HWE histidine kinase; PAS fold-3 domain protein; SMART: PAC repeat-containing protein.
 
     0.524
Caul_3704
PFAM: protein of unknown function DUF1206; KEGG: rxy:Rxyl_0683 protein of unknown function DUF1206.
 
     0.523
Caul_3141
KEGG: xoo:XOO2689 general stress protein.
 
    0.517
Caul_1264
PFAM: sodium/hydrogen exchanger; KEGG: rru:Rru_A1350 sodium/hydrogen exchanger.
 
   
 0.506
Caul_0470
PFAM: response regulator receiver; KEGG: ccr:CC_3015 response regulator.
  
     0.489
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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