Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Caul_1027PFAM: peptidase M23B; KEGG: ccr:CC_3034 peptidase, M23/M37 family. (464 aa)    
Predicted Functional Partners:
Caul_2574
KEGG: ccr:CC_1875 penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase.
 
   
 0.640
Caul_4205
KEGG: ccr:CC_0252 penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase.
  
   
 0.571
Caul_3416
KEGG: ccr:CC_2150 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; Belongs to the peptidase S26 family.
 
  
 0.552
Caul_1736
KEGG: ccr:CC_1559 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; Belongs to the peptidase S26 family.
 
  
 0.521
Caul_3921
KEGG: ccr:CC_3277 penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase.
  
   
 0.517
Caul_4723
PFAM: peptidase M23B; KEGG: ccr:CC_3434 peptidase, M23/M37 family.
 
   
 0.493
Caul_1701
TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: ccr:CC_1516 penicillin-binding protein, 1A family.
  
   
 0.461
Caul_1026
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ccr:CC_3035 cell cycle transcriptional regulator CtrA.
     
 0.433
Caul_1078
TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: ccr:CC_1516 penicillin-binding protein, 1A family.
  
   
 0.432
Caul_2165
PFAM: Lytic transglycosylase catalytic; KEGG: ccr:CC_1332 transglycosylase, putative.
 
   
 0.414
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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