STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_1203PFAM: Chromosomal replication initiator DnaA domain; KEGG: ccr:CC_1058 hypothetical protein. (128 aa)    
Predicted Functional Partners:
Caul_1204
KEGG: ccr:CC_1059 hypothetical protein.
 
 
 
 0.885
Caul_0162
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 
 0.811
Caul_1353
KEGG: ccr:CC_2276 hypothetical protein.
  
     0.719
Caul_3911
KEGG: ccr:CC_2782 hypothetical protein.
  
     0.641
Caul_3902
TIGRFAM: phage cell wall peptidase, NlpC/P60 family; KEGG: ccr:CC_2775 hypothetical protein.
  
   
 0.638
Caul_3273
KEGG: ccr:CC_1114 hypothetical protein.
  
   
 0.637
Caul_3909
Hypothetical protein; KEGG: nha:Nham_1420 gene transfer agent (GTA) like protein.
  
     0.622
Caul_3910
TIGRFAM: phage major tail protein, TP901-1 family; KEGG: ccr:CC_2781 hypothetical protein.
  
     0.621
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: ccr:CC_1721 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
 
  
 0.610
Caul_1529
PFAM: lipopolysaccharide biosynthesis protein; KEGG: ccr:CC_2431 hypothetical protein.
  
     0.604
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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