STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_1377PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: ccr:CC_2461 alkaline phosphatase, putative. (562 aa)    
Predicted Functional Partners:
Caul_4531
PFAM: peptidase M14 carboxypeptidase A; KEGG: ccr:CC_0311 hypothetical protein.
  
  
  0.661
Caul_2650
KEGG: ccr:CC_0985 hypothetical protein.
  
  
  0.608
Caul_0042
PFAM: ribonuclease T2; KEGG: ccr:CC_0030 ribonuclease T2 family protein; Belongs to the RNase T2 family.
  
     0.580
Caul_3199
PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: ccr:CC_2198 peptidase M1 family protein.
  
  
  0.552
Caul_3408
PFAM: beta-lactamase domain protein; KEGG: ccr:CC_2139 metallo-beta-lactamase superfamily protein.
 
     0.452
Caul_4101
PFAM: regulatory protein TetR; KEGG: nar:Saro_0933 transcriptional regulator, TetR family.
  
     0.444
Caul_1375
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: swi:Swit_0787 ABC transporter related.
       0.433
Caul_1376
PFAM: binding-protein-dependent transport systems inner membrane component; Substrate-binding region of ABC-type glycine betaine transport system; KEGG: rpd:RPD_2104 substrate-binding region of ABC-type glycine betaine transport system.
       0.433
Caul_0355
KEGG: ccr:CC_3419 hypothetical protein.
  
 
 
 0.423
Caul_3450
PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein; KEGG: xac:XAC2341 glutaryl-7-ACA acylase precursor.
 
     0.419
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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