STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_1711PFAM: Squalene/phytoene synthase; KEGG: psa:PST_3872 phytoene synthase. (309 aa)    
Predicted Functional Partners:
Caul_1712
TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: psa:PST_3873 phytoene desaturase.
 
 
 0.997
Caul_1713
TIGRFAM: lycopene cyclase; lycopene cyclase family protein; PFAM: Lycopene beta and epsilon cyclase; KEGG: psa:PST_3874 lycopene cyclase.
 
  
 0.969
Caul_3315
PFAM: Polyprenyl synthetase; KEGG: ccr:CC_2069 geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
 0.907
Caul_3104
KEGG: ccr:CC_1987 hypothetical protein.
    
  0.906
Caul_1707
PFAM: Polyprenyl synthetase; KEGG: xau:Xaut_4133 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
 0.905
Caul_3376
PFAM: Polyprenyl synthetase; KEGG: ccr:CC_2113 polyprenyl synthetase family protein; Belongs to the FPP/GGPP synthase family.
  
 0.904
Caul_1710
PFAM: fatty acid hydroxylase; KEGG: psa:PST_3871 beta-carotene hydroxylase.
 
 
 0.839
Caul_2801
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
   
 
 0.823
Caul_1935
PFAM: FAD dependent oxidoreductase; KEGG: bxe:Bxe_C0637 putative dehydrogenase.
 
  
 0.811
Caul_3934
PFAM: FAD dependent oxidoreductase; KEGG: ccr:CC_3121 phytoene dehydrogenase-related protein.
 
  
 0.697
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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