Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Caul_1908PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_5045 TonB-dependent receptor. (755 aa)    
Predicted Functional Partners:
Caul_3783
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_2291 TonB-dependent receptor.
  
     0.749
Caul_1970
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_4318 TonB-dependent receptor.
  
     0.743
Caul_3289
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_1691 TonB-dependent receptor.
  
     0.736
Caul_4007
PFAM: TonB-dependent receptor; KEGG: swi:Swit_0680 TonB-dependent receptor.
  
     0.734
Caul_0591
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcb:XC_2899 TonB-dependent receptor.
  
     0.693
Caul_3922
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xft:PD1711 TonB-dependent receptor.
  
     0.683
Caul_4694
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccr:CC_0214 TonB-dependent receptor.
  
   
 0.668
Caul_0865
OmpA/MotB domain protein; PFAM: surface antigen msp4 family protein; OmpA/MotB domain protein; KEGG: ccr:CC_0747 OmpA family protein.
 
  
 0.617
Caul_4662
PFAM: OmpA/MotB domain protein; KEGG: ccr:CC_3494 OmpA family protein.
 
  
 0.615
Caul_4077
Cyclic nucleotide-binding protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_3961 TonB-dependent receptor.
  
     0.601
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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