Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Caul_1990RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: ccr:CC_2707 RNA polymerase sigma-70 factor, ECF subfamily. (178 aa)    
Predicted Functional Partners:
Caul_1989
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: ccr:CC_2708 transcriptional regulator, putative.
 
 
 0.956
Caul_2244
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: ccr:CC_2708 transcriptional regulator, putative.
 
 
 0.830
Caul_2427
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: pen:PSEEN0275 FecR-like transmembrane sensor.
 
 
 0.830
Caul_2103
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: rpe:RPE_2638 putative FecR.
 
 
 0.829
Caul_2382
KEGG: ccr:CC_0982 regulatory protein PupR, putative.
 
 
 0.829
Caul_2727
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: pen:PSEEN0275 FecR-like transmembrane sensor.
 
 
 0.829
Caul_4078
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: ccr:CC_0982 regulatory protein PupR, putative.
 
 
 0.829
Caul_0142
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: pfo:Pfl_3785 putative FecR.
 
 
 0.828
Caul_1860
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: xac:XAC2192 two-component system sensor protein.
 
 
 0.828
Caul_2125
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: ppu:PP_3555 transmembrane sensor, putative.
 
 
 0.828
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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