Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Caul_2000KEGG: nha:Nham_1368 hypothetical protein. (119 aa)    
Predicted Functional Partners:
Caul_1998
KEGG: nha:Nham_1370 hypothetical protein.
       0.817
Caul_1997
KEGG: bvi:Bcep1808_0171 hypothetical protein.
       0.786
Caul_1999
PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: bvi:Bcep1808_0170 UBA/ThiF-type NAD/FAD binding protein.
       0.786
Caul_2001
PFAM: thymidylate synthase; KEGG: bxe:Bxe_A0214 putative thymidylate synthase.
       0.550
Caul_1993
KEGG: mlo:mll6134 hypothetical protein.
       0.537
Caul_1995
KEGG: nha:Nham_4491 hypothetical protein.
       0.521
Caul_1996
KEGG: mlo:msl6138 transcriptional regulator.
       0.521
Caul_1994
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: mlo:mll6136 hypothetical protein.
       0.511
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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