Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Caul_2002PFAM: Integrase catalytic region; KEGG: rso:RSp0548 ISRSO8-transposase orfB protein. (286 aa)    
Predicted Functional Partners:
Caul_2003
PFAM: transposase IS3/IS911 family protein; KEGG: azc:AZC_3852 transposase.
  
  
 0.786
Caul_2004
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: maq:Maqu_1909 methyltransferase type 11.
       0.773
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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