Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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[Homology]
Score
Caul_2007PFAM: integrase family protein; KEGG: acr:Acry_3506 phage integrase family protein. (313 aa)    
Predicted Functional Partners:
Caul_2006
PFAM: integrase family protein; KEGG: acr:Acry_3507 phage integrase family protein.
     0.946
Caul_2008
PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: acr:Acry_3266 phage integrase family protein; Belongs to the 'phage' integrase family.
 
    
0.840
Caul_2010
KEGG: bbt:BBta_7395 hypothetical protein.
 
     0.800
Caul_2009
KEGG: rpc:RPC_3921 antirestriction protein; ArdC.
       0.773
Caul_2230
PFAM: integrase family protein; KEGG: acr:Acry_3507 phage integrase family protein.
 
     0.772
Caul_2005
PFAM: domain of unknown function DUF1738; KEGG: mlo:mlr6154 antirestriction protein.
       0.592
Caul_2011
SMART: ParB domain protein nuclease; KEGG: mlo:mlr6157 similar to partitioning protein.
 
  
 0.560
rpsO
Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
   
 0.497
rpsI
PFAM: ribosomal protein S9; KEGG: ccr:CC_1377 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
    
 0.497
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
   
 0.495
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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