STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_2016PFAM: Lytic transglycosylase catalytic; KEGG: pla:Plav_1820 lytic transglycosylase catalytic. (210 aa)    
Predicted Functional Partners:
Caul_2015
KEGG: sal:Sala_2622 conjugal transfer protein TraF.
 
     0.820
Caul_2014
KEGG: mlo:msr6186 hypothetical protein.
 
     0.812
Caul_2017
KEGG: pla:Plav_1821 hypothetical protein.
 
   
 0.571
Caul_2013
PFAM: protein of unknown function DUF736; KEGG: mlo:mlr6185 hypothetical protein.
 
     0.559
Caul_1023
ATPase, FliI/YscN family; KEGG: ccr:CC_3040 flagellum-specific ATP synthase FliI; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase.
 
  
 0.556
fliE
TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: ccr:CC_0955 flagellar hook-basal body complex protein FliE.
  
  
 0.493
Caul_3112
Peptidase M23B; PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: ccr:CC_1996 peptidase, M23/M37 family.
  
  
 0.479
Caul_4270
PFAM: protein of unknown function DUF1078 domain protein; KEGG: ccr:CC_2839 hypothetical protein.
  
  
 0.445
Caul_1434
Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
    0.425
Caul_3254
Flagellin domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
 
 0.425
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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