STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_2016PFAM: Lytic transglycosylase catalytic; KEGG: pla:Plav_1820 lytic transglycosylase catalytic. (210 aa)    
Predicted Functional Partners:
Caul_2015
KEGG: sal:Sala_2622 conjugal transfer protein TraF.
 
     0.816
Caul_2014
KEGG: mlo:msr6186 hypothetical protein.
 
     0.811
Caul_2017
KEGG: pla:Plav_1821 hypothetical protein.
 
   
 0.569
Caul_2013
PFAM: protein of unknown function DUF736; KEGG: mlo:mlr6185 hypothetical protein.
 
     0.560
Caul_3112
Peptidase M23B; PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: ccr:CC_1996 peptidase, M23/M37 family.
  
  
 0.467
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.