Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Caul_2017KEGG: pla:Plav_1821 hypothetical protein. (662 aa)    
Predicted Functional Partners:
Caul_2015
KEGG: sal:Sala_2622 conjugal transfer protein TraF.
 
     0.867
Caul_2014
KEGG: mlo:msr6186 hypothetical protein.
 
     0.860
Caul_2026
PFAM: CopG domain protein DNA-binding domain protein; KEGG: pla:Plav_1834 CopG domain protein DNA-binding domain protein.
 
     0.786
Caul_2031
TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: mlo:mlr6401 conjugal transfer protein TrbJ.
 
     0.780
Caul_2025
PFAM: TRAG family protein; KEGG: mlo:mlr6395 conjugal transfer protein traG.
 
   
 0.776
Caul_2029
KEGG: pla:Plav_1837 putative conjugal transfer TrbD transmembrane protein.
 
     0.776
Caul_2032
TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: mlo:mlr6402 conjugal transfer protein; TrbL.
 
     0.775
Caul_2253
Type IV secretory pathway VirD4 protein-like protein; KEGG: sal:Sala_2618 TraG protein.
 
   
 0.775
Caul_2250
Type IV secretory pathway protease TraF-like protein; KEGG: sal:Sala_2622 conjugal transfer protein TraF.
 
     0.773
Caul_2034
TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: ccr:CC_2686 conjugal transfer protein TrbG.
 
     0.770
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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