Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Caul_2020PFAM: S1/P1 nuclease; KEGG: zmo:ZMO0127 nuclease S1. (287 aa)    
Predicted Functional Partners:
Caul_2022
PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: xau:Xaut_3049 exonuclease RNase T and DNA polymerase III.
       0.537
Caul_2021
KEGG: aba:Acid345_4127 hypothetical protein.
       0.531
Caul_1643
PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: ccr:CC_1277 type I phosphodiesterase/nucleotide pyrophosphatase family protein.
 
     0.433
Caul_0655
PFAM: peptidase M20; peptidase M28; KEGG: xac:XAC0615 aminopeptidase.
  
     0.410
Caul_2023
Hypothetical protein.
       0.407
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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