STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_2476PFAM: regulatory protein ArsR; KEGG: rpc:RPC_3223 transcriptional regulator, ArsR family. (110 aa)    
Predicted Functional Partners:
Caul_2475
PFAM: Rhodanese domain protein; KEGG: acr:Acry_1392 rhodanese domain protein.
  
  
 0.812
Caul_2474
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: swi:Swit_3724 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.719
Caul_2473
PFAM: acriflavin resistance protein; KEGG: swi:Swit_3725 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
     
 0.679
Caul_2472
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; KEGG: pla:Plav_1619 regulatory protein ArsR.
 
    
0.666
Caul_2479
KEGG: swi:Swit_3721 hypothetical protein.
 
  
 0.617
Caul_2477
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: swi:Swit_3722 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
     
 0.585
Caul_2478
PFAM: Thioredoxin domain; KEGG: acr:Acry_1389 thioredoxin domain protein.
     
 0.559
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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