STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_2856PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: maq:Maqu_1429 short-chain dehydrogenase/reductase SDR. (255 aa)    
Predicted Functional Partners:
Caul_0547
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mpt:Mpe_A2666 oxidoreductase, short-chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.648
Caul_4300
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ccr:CC_2861 oxidoreductase, short-chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.494
Caul_2855
PFAM: nitroreductase; KEGG: har:HEAR2542 conserved hypothetical protein, putative oxidoreductase.
  
   0.471
Caul_0237
PFAM: sulfatase; KEGG: mva:Mvan_4274 sulfatase.
   
 
 0.463
Caul_2674
PFAM: sulfatase; KEGG: ccr:CC_1172 sulfatase family protein.
   
 
 0.463
Caul_2517
TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: ccr:CC_1674 malonyl CoA-acyl carrier protein transacylase.
 
 
 0.413
Caul_2854
Erythromycin esterase; PFAM: phosphoribosyltransferase; dienelactone hydrolase; Erythromycin esterase; KEGG: sme:SMb20088 hypothetical fusion protein.
       0.411
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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