STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vapC-6Conserved hypothetical protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (136 aa)    
Predicted Functional Partners:
Caul_2906
Hypothetical protein.
       0.773
Caul_2907
PFAM: peptidase M48 Ste24p; KEGG: nar:Saro_0005 peptidase M48, Ste24p.
       0.628
Caul_4158
TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: sdn:Sden_2443 YD repeat.
  
     0.451
Caul_2908
PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: ccr:CC_1441 cystine ABC transporter, periplasmic cystine-binding protein.
       0.425
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.