STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_3187PFAM: secretion protein HlyD family protein; KEGG: cvi:CV_0709 probable multidrug resistance transmembrane protein. (375 aa)    
Predicted Functional Partners:
Caul_3188
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: swi:Swit_3229 drug resistance transporter, EmrB/QacA subfamily.
 
 
 0.948
Caul_3186
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: swi:Swit_1143 RND efflux system, outer membrane lipoprotein, NodT family.
 
 
 0.903
Caul_2689
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rsq:Rsph17025_2256 drug resistance transporter, EmrB/QacA subfamily.
 
 
 0.848
Caul_5066
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: ccr:CC_3715 drug resistance transporter, EmrB/QacA subfamily.
 
 
 0.844
Caul_3327
PFAM: major facilitator superfamily MFS_1; KEGG: mxa:MXAN_4609 drug resistance transporter, EmrB/QacA family.
 
 
 0.742
Caul_0858
KEGG: pst:PSPTO_3704 transporter, putative.
 
 
 0.682
Caul_0921
PFAM: major facilitator superfamily MFS_1; KEGG: ccr:CC_3069 major facilitator family transporter.
 
 
 0.678
Caul_3306
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_2829 RND efflux system, outer membrane lipoprotein, NodT.
 
 
 0.627
Caul_4620
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_2370 drug resistance transporter EmrB/QacA subfamily.
 
 
 0.619
Caul_2690
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bvi:Bcep1808_6323 RND efflux system, outer membrane lipoprotein, NodT family.
 
 
 0.617
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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