STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_3247PFAM: AMP-dependent synthetase and ligase; KEGG: pla:Plav_1034 AMP-dependent synthetase and ligase. (497 aa)    
Predicted Functional Partners:
Caul_4604
PFAM: AMP-dependent synthetase and ligase; KEGG: swi:Swit_1599 AMP-dependent synthetase and ligase.
  
  
 
0.904
Caul_3248
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: fra:Francci3_3423 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
   0.658
acsA
acetate--CoA ligase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
 
 
0.534
Caul_3446
PFAM: cytochrome P450; KEGG: ccr:CC_2494 cytochrome P450 family protein.
  
 0.528
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
 0.511
Caul_0125
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: ccr:CC_0076 enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase.
  
 
 0.496
Caul_0813
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: ccr:CC_3189 fatty oxidation complex, alpha subunit; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.496
Caul_1912
PFAM: cytochrome P450; KEGG: bxe:Bxe_C0599 cytochrome P450.
  
 0.487
Caul_0020
PFAM: cytochrome P450; KEGG: ccr:CC_0063 cytochrome P450 family protein.
  
 0.484
Caul_4405
PFAM: cytochrome P450; KEGG: ccr:CC_0946 cytochrome P450 family protein.
  
 0.481
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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