STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_3291KEGG: rru:Rru_A1473 hypothetical protein. (108 aa)    
Predicted Functional Partners:
Caul_3292
PFAM: protein of unknown function DUF1446; KEGG: bur:Bcep18194_A4511 protein of unknown function DUF1446.
 
     0.950
Caul_3293
TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: C4-dicarboxylate anaerobic carrier; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bur:Bcep18194_A4510 citrate transporter.
 
     0.943
Caul_3290
KEGG: azo:azo3634 probable D-(-)-3-hydroxybutyrate oligomer hydrolase.
       0.776
Caul_0485
TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: Citrate transporter; KEGG: pla:Plav_0536 citrate/H+ symporter, CitMHS family.
 
     0.690
Caul_3294
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_1243 transcriptional regulator, LysR family.
 
     0.540
Caul_3289
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_1691 TonB-dependent receptor.
       0.414
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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