STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_3581PFAM: MotA/TolQ/ExbB proton channel; KEGG: ccr:CC_2336 MotA/TolQ/ExbB proton channel family protein. (299 aa)    
Predicted Functional Partners:
Caul_3580
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ccr:CC_2335 ExbD/TolR family protein.
 
 
 0.982
Caul_3579
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: ccr:CC_2327 TonB protein, putative.
 
 
 0.932
Caul_4429
TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ccr:CC_3232 ExbD/TolR family protein.
 
 
 0.922
Caul_0197
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ccr:CC_0322 biopolymer transport protein ExbD.
 
 
 0.921
Caul_0198
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ccr:CC_0322 biopolymer transport protein ExbD.
 
 
 0.921
Caul_2106
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: bur:Bcep18194_B1088 biopolymer transport protein ExbD/TolR.
 
 
 0.853
pal
Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
   
 0.769
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
   
 0.742
Caul_2811
TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: ccr:CC_1930 conserved hypothetical protein.
 
    0.733
lnt
Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.
  
   
 0.698
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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