STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_3703PFAM: MscS Mechanosensitive ion channel; KEGG: bra:BRADO5370 conserved hypothetical protein; putative membrane protein; putative small-conductance mechanosensitive channel. (373 aa)    
Predicted Functional Partners:
Caul_1771
HAD-superfamily hydrolase, subfamily IIB; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
 
   
 0.537
Caul_1778
PFAM: glycoside hydrolase 15-related; KEGG: swi:Swit_3609 glycoside hydrolase 15-related.
 
    0.501
trmFO
Gid protein; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily.
       0.492
Caul_1772
PFAM: glycosyl transferase family 20; KEGG: nar:Saro_1505 alpha,alpha-trehalose-phosphate synthase (UDP-forming).
 
   
 0.488
Caul_1376
PFAM: binding-protein-dependent transport systems inner membrane component; Substrate-binding region of ABC-type glycine betaine transport system; KEGG: rpd:RPD_2104 substrate-binding region of ABC-type glycine betaine transport system.
   
  
 0.432
Caul_3704
PFAM: protein of unknown function DUF1206; KEGG: rxy:Rxyl_0683 protein of unknown function DUF1206.
 
   
 0.419
Caul_4668
PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: ccr:CC_3496 TrkA family protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
  
 0.413
Caul_4703
TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: ccr:CC_0204 TrkA family protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
  
 0.413
Caul_4672
TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: mlo:mlr3234 potassium-efflux system protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
  
 0.409
Caul_0983
PFAM: ribonuclease BN; KEGG: rsp:RSP_2660 ribonuclease BN family protein.
 
    0.402
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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