STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_3764PFAM: NLPA lipoprotein; KEGG: ccr:CC_2664 TonB-dependent receptor, putative. (265 aa)    
Predicted Functional Partners:
Caul_3767
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ccr:CC_2668 ABC transporter, permease protein.
 0.999
metN
ABC transporter related; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
 0.998
cysC
Sulfate adenylyltransferase, large subunit; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
   
  
 0.615
Caul_3765
KEGG: ccr:CC_2666 hypothetical protein.
       0.525
Caul_2908
PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: ccr:CC_1441 cystine ABC transporter, periplasmic cystine-binding protein.
 
  
 0.510
Caul_0027
PFAM: S-adenosylmethionine synthetase; KEGG: ccr:CC_0050 S-adenosylmethionine synthetase; Belongs to the AdoMet synthase family.
  
  
 0.498
Caul_3409
KEGG: ccr:CC_2140 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
  
  
 0.478
Caul_4554
TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: ccr:CC_0286 sulfate-binding protein.
  
  
 0.478
Caul_4951
TIGRFAM: glutamate synthase, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ccr:CC_3606 glutamate synthase, small subunit.
   
    0.448
cysD
TIGRFAM: sulfate adenylyltransferase, small subunit; PFAM: phosphoadenosine phosphosulfate reductase; KEGG: ccr:CC_1483 sulfate adenylate transferase, subunit 2.
   
  
 0.437
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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