STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_3767PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ccr:CC_2668 ABC transporter, permease protein. (221 aa)    
Predicted Functional Partners:
Caul_3764
PFAM: NLPA lipoprotein; KEGG: ccr:CC_2664 TonB-dependent receptor, putative.
 0.999
metN
ABC transporter related; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
 0.999
Caul_3769
KEGG: ccr:CC_2670 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein.
  
    0.533
Caul_3409
KEGG: ccr:CC_2140 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
   
  
 0.508
Caul_3766
KEGG: ccr:CC_2667 hypothetical protein.
       0.482
Caul_1432
PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: ccr:CC_2063 flagellar basal-body rod protein FlgF; Belongs to the flagella basal body rod proteins family.
   
   0.455
Caul_0294
Phosphoenolpyruvate-protein phosphotransferase; TIGRFAM: PTS system, glucose subfamily, IIA subunit; phosphocarrier, HPr family; phosphoenolpyruvate-protein phosphotransferase; PFAM: phosphocarrier HPr protein; PEP-utilizing protein; sugar-specific permease EIIA 1 domain; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: ccr:CC_0448 PTS system, fructose-specific EIIA/HPr/EI components.
     
 0.418
Caul_2909
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ccr:CC_1440 cystine ABC tranporter, permease protein, putative.
  
   
 0.404
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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