STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_3953PFAM: aminotransferase class-III; KEGG: ccr:CC_3139 glutamate-1-semialdehyde 2,1-aminomutase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (455 aa)    
Predicted Functional Partners:
Caul_3057
Porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase; KEGG: ccr:CC_1347 delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
 
 
 0.983
Caul_3049
KEGG: ccr:CC_1355 5-aminolevulinic acid synthase; TIGRFAM: 5-aminolevulinic acid synthase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; aminotransferase class-III.
     
 0.943
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
 
  
 0.843
Caul_3952
PFAM: glutamine synthetase catalytic region; KEGG: ccr:CC_3138 glutamine synthetase family protein.
  
 0.821
Caul_3946
PFAM: aminotransferase class-III; KEGG: ccr:CC_3132 hypothetical protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.738
Caul_0048
TIGRFAM: siroheme synthase; KEGG: ccr:CC_0024 precorrin-2 oxidase / ferrochelatase.
     
 0.589
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.577
Caul_3957
PFAM: aminotransferase class-III; KEGG: ccr:CC_3143 omega-amino acid--pyruvate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.561
Caul_3954
TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; KEGG: ccr:CC_3140 succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
 0.536
Caul_3955
PFAM: Aldehyde dehydrogenase; KEGG: ccr:CC_3141 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
 0.529
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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