Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Caul_4100PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccr:CC_3161 TonB-dependent receptor. (985 aa)    
Predicted Functional Partners:
Caul_4099
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pau:PA14_19990 putative sigma-70 factor, ECF subfamily.
 
    0.699
Caul_4007
PFAM: TonB-dependent receptor; KEGG: swi:Swit_0680 TonB-dependent receptor.
  
     0.680
Caul_0591
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcb:XC_2899 TonB-dependent receptor.
  
     0.674
Caul_4662
PFAM: OmpA/MotB domain protein; KEGG: ccr:CC_3494 OmpA family protein.
 
  
 0.670
Caul_0865
OmpA/MotB domain protein; PFAM: surface antigen msp4 family protein; OmpA/MotB domain protein; KEGG: ccr:CC_0747 OmpA family protein.
 
  
 0.661
Caul_1970
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_4318 TonB-dependent receptor.
  
     0.650
Caul_2509
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccr:CC_1666 TonB-dependent receptor.
  
  
 0.639
Caul_1988
PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: ccr:CC_2709 TonB-dependent receptor.
  
     0.603
Caul_2355
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sal:Sala_2411 TonB-dependent receptor.
  
     0.596
Caul_2859
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccr:CC_2709 TonB-dependent receptor.
  
     0.586
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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