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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_4100PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccr:CC_3161 TonB-dependent receptor. (985 aa)    
Predicted Functional Partners:
Caul_0591
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcb:XC_2899 TonB-dependent receptor.
  
    0.703
Caul_4099
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pau:PA14_19990 putative sigma-70 factor, ECF subfamily.
 
    0.693
Caul_4007
PFAM: TonB-dependent receptor; KEGG: swi:Swit_0680 TonB-dependent receptor.
  
     0.680
Caul_2509
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccr:CC_1666 TonB-dependent receptor.
  
  
 0.668
Caul_1970
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_4318 TonB-dependent receptor.
  
   
 0.650
Caul_1988
PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: ccr:CC_2709 TonB-dependent receptor.
  
    0.639
Caul_2355
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sal:Sala_2411 TonB-dependent receptor.
  
    0.632
Caul_2859
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccr:CC_2709 TonB-dependent receptor.
  
    0.623
Caul_1378
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccr:CC_1093 TonB-dependent receptor, putative.
  
  
 0.616
Caul_3922
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xft:PD1711 TonB-dependent receptor.
  
    0.613
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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