STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_4164TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: mgm:Mmc1_1969 type I secretion membrane fusion protein, HlyD family. (469 aa)    
Predicted Functional Partners:
Caul_4165
Type I secretion system ATPase; KEGG: bra:BRADO6201 toxin secretion ABC transporter (ATP-binding and membrane protein); HlyB-like protein; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase.
 
 0.983
Caul_4162
TIGRFAM: outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; Cadherin; KEGG: amr:AM1_3186 hemolysin-type calcium-binding protein.
 
  
 0.948
Caul_4161
PFAM: RTX toxin-activating protein C; KEGG: bra:BRADO6927 RTX toxin-activating lysine-acyltransferase (type I secretion system).
 
   
 0.883
Caul_4655
PFAM: Hemolysin-type calcium-binding region; KEGG: rpb:RPB_0803 5'-nucleotidase.
 
  
 0.789
Caul_4814
KEGG: nmu:Nmul_A1280 type I secretion system ATPase, PrtD; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.782
Caul_4163
Hypothetical protein.
       0.773
Caul_2121
PFAM: Hemolysin-type calcium-binding region; KEGG: oan:Oant_3435 hemolysin-type calcium-binding region.
 
  
 0.767
Caul_4884
Serralysin; KEGG: pap:PSPA7_4143 alkaline metalloproteinase precursor; PFAM: Hemolysin-type calcium-binding region; Peptidase M10 serralysin; SMART: peptidase metallopeptidase.
 
  
 0.758
Caul_4802
PFAM: glycoside hydrolase family 16; Hemolysin-type calcium-binding region; KEGG: mlo:mll2585 endo-1,3-1,4-beta-glycanase.
 
  
 0.701
Caul_4762
PFAM: Hemolysin-type calcium-binding region; KEGG: swi:Swit_4004 hemolysin-type calcium-binding region.
 
  
 0.679
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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