STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_4188PFAM: type II secretion system protein; KEGG: ccr:CC_2940 hypothetical protein. (328 aa)    
Predicted Functional Partners:
Caul_4189
PFAM: type II secretion system protein; KEGG: ccr:CC_2941 hypothetical protein.
 
  
 0.998
Caul_4194
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: ccr:CC_2946 pilus assembly protein CpaB.
 
  
 0.989
Caul_4191
KEGG: ccr:CC_2943 pilus assembly protein CpaE.
 
  
 0.984
Caul_4190
PFAM: type II secretion system protein E; KEGG: ccr:CC_2942 pilus assembly protein CpaF.
 
  
 0.977
Caul_4193
PFAM: type II and III secretion system protein; transport-associated; KEGG: ccr:CC_2945 pilus assembly protein CpaC; Belongs to the bacterial secretin family.
 
  
 0.977
Caul_4192
TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD; PFAM: Pilus biogenesis CpaD family protein; KEGG: ccr:CC_2944 pilus assembly protein CpaD.
 
     0.924
Caul_4196
PFAM: Flp/Fap pilin component; KEGG: ccr:CC_2948 pilus subunit protein PilA.
 
  
 0.902
Caul_4195
PFAM: peptidase A24A prepilin type IV; KEGG: ccr:CC_2947 prepilin peptidase CpaA.
 
   
 0.882
Caul_2027
TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E; KEGG: pla:Plav_1835 P-type conjugative transfer ATPase TrbB.
 
  
 0.870
Caul_4199
KEGG: ccr:CC_2951 hypothetical protein.
 
    0.868
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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