STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_4269Putative transmembrane anti-sigma factor; KEGG: xoo:XOO2344 hypothetical protein. (275 aa)    
Predicted Functional Partners:
Caul_4268
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: swi:Swit_3836 RNA polymerase, sigma-24 subunit, ECF subfamily.
 
 
 0.904
Caul_4267
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: sal:Sala_2958 peptidase S8 and S53, subtilisin, kexin, sedolisin.
 
   
 0.895
Caul_0089
TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: response regulator receiver; KEGG: ccr:CC_3477 two-component response regulator.
 
 
 0.597
Caul_1569
PFAM: PASTA domain containing protein; KEGG: sma:SAV4338 serine/threonine protein kinase.
   
 
 0.595
Caul_2400
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_2291 TonB-dependent receptor.
  
     0.565
Caul_2073
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_2291 TonB-dependent receptor.
  
     0.543
Caul_0091
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: ccr:CC_3475 RNA polymerase sigma-70 factor, ECF subfamily.
  
 
 0.509
Caul_1961
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: ccr:CC_2883 RNA polymerase sigma-70 factor, ECF subfamily.
  
 
 0.509
Caul_2060
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: ccr:CC_2883 RNA polymerase sigma-70 factor, ECF subfamily.
  
 
 0.509
Caul_2491
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: ccr:CC_1646 RNA polymerase sigma-70 factor, ECF subfamily.
  
 
 0.509
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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