STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_4334Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dac:Daci_1560 transcriptional regulator, LysR family. (302 aa)    
Predicted Functional Partners:
Caul_0449
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pla:Plav_1033 transcriptional regulator, LysR family.
  
     0.748
Caul_4881
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ccr:CC_3697 transcriptional regulator, LysR family.
  
     0.612
Caul_1077
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cbu:CBU_1476 hydrogen peroxide-inducible genes activator OxyR; Belongs to the LysR transcriptional regulatory family.
  
     0.547
Caul_4333
PFAM: Pirin domain protein; Cupin 2 conserved barrel domain protein; KEGG: ccr:CC_1473 conserved hypothetical protein; Belongs to the pirin family.
   
   0.531
Caul_4950
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: ccr:CC_3607 glutamate synthase, large subunit.
     
 0.400
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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