STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caul_4527PFAM: nitrogen-fixing NifU domain protein; KEGG: ccr:CC_0462 hypothetical protein. (153 aa)    
Predicted Functional Partners:
Caul_2587
PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: ccr:CC_1865 aminotransferase, class V.
  
 0.999
Caul_2593
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 
 0.997
Caul_3395
PFAM: heat shock protein DnaJ domain protein; KEGG: ccr:CC_2134 DnaJ-related protein.
  
 
 0.983
Caul_2595
TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: ccr:CC_1858 HesB/YadR/YfhF family protein; Belongs to the HesB/IscA family.
  
  
 0.960
Caul_4835
PFAM: ferredoxin; KEGG: ccr:CC_3524 ferredoxin, 2Fe-2S.
  
 0.957
Caul_2591
FeS assembly ATPase SufC; KEGG: ccr:CC_1862 ABC transporter, ATP-binding protein; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.955
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 
 0.887
Caul_2334
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: sal:Sala_2468 oxidoreductase FAD-binding region.
  
 0.877
Caul_2594
TIGRFAM: FeS assembly SUF system protein; PFAM: protein of unknown function DUF59; KEGG: ccr:CC_1859 hypothetical protein.
 
    0.863
Caul_2592
PFAM: SufBD protein; KEGG: ccr:CC_1861 hypothetical protein.
 
  
 0.848
Your Current Organism:
Caulobacter sp. K31
NCBI taxonomy Id: 366602
Other names: C. sp. K31
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